Modeling a Mixture in Traditional Representation

When modeling mixtures, we are often faced with a large set of ingredients to choose from. A common way to formalize this type of selection problem is to assign each ingredient its own numerical parameter representing the amount of the ingredient in the mixture. A sum constraint imposed on all parameters then ensures that the total amount of ingredients in the mix is always 100%. In addition, there could be other constraints, for instance, to impose further restrictions on individual subgroups of ingredients. In BayBE’s language, we call this the traditional mixture representation.

In this example, we demonstrate how to create a search space in this representation, using a simple mixture of up to six components, which are divided into three subgroups: solvents, bases and phase agents.

Slot-based Representation

For an alternative way to describe mixtures, see our slot-based representation.

Imports

import numpy as np
import pandas as pd

from baybe.constraints import ContinuousLinearConstraint
from baybe.parameters import NumericalContinuousParameter
from baybe.recommenders import RandomRecommender
from baybe.searchspace import SearchSpace

Parameter Setup

We start by creating lists containing our substance labels according to their subgroups:

g1 = ["Solvent1", "Solvent2"]
g2 = ["Base1", "Base2"]
g3 = ["PhaseAgent1", "PhaseAgent2"]

Next, we create continuous parameters describing the substance amounts for each group. Here, the maximum amount for each substance depends on its group, i.e. we allow adding more of a solvent compared to a base or a phase agent:

p_g1_amounts = [
    NumericalContinuousParameter(name=f"{name}", bounds=(0, 80)) for name in g1
]
p_g2_amounts = [
    NumericalContinuousParameter(name=f"{name}", bounds=(0, 20)) for name in g2
]
p_g3_amounts = [
    NumericalContinuousParameter(name=f"{name}", bounds=(0, 5)) for name in g3
]

Constraints Setup

Now, we set up our constraints. We start with the overall mixture constraint, ensuring the total of all ingredients is 100%:

c_total_sum = ContinuousLinearConstraint(
    parameters=g1 + g2 + g3,
    operator="=",
    coefficients=(1,) * len(g1 + g2 + g3),
    rhs=100,
)

Additionally, we require bases make up at least 10% of the mixture:

c_g2_min = ContinuousLinearConstraint(
    parameters=g2,
    operator=">=",
    coefficients=(1,) * len(g2),
    rhs=10,
)

By contrast, phase agents should make up no more than 5%:

c_g3_max = ContinuousLinearConstraint(
    parameters=g3,
    operator="<=",
    coefficients=(1,) * len(g3),
    rhs=5,
)

Search Space Creation

Having both parameter and constraint definitions at hand, we can create our search space:

searchspace = SearchSpace.from_product(
    parameters=[*p_g1_amounts, *p_g2_amounts, *p_g3_amounts],
    constraints=[c_total_sum, c_g2_min, c_g3_max],
)

Verification of Constraints

To verify that the constraints imposed above are fulfilled, let us draw some random points from the search space:

recommendations = RandomRecommender().recommend(batch_size=10, searchspace=searchspace)
print(recommendations)

       Base1      Base2  PhaseAgent1  PhaseAgent2   Solvent1   Solvent2
0   3.952932  10.954884     4.043146     0.570338   1.817000  78.661699
1   8.483996   8.200169     0.821513     2.655539  56.184464  23.654319
2   9.133352  11.994969     1.889246     1.310343  25.068191  50.603900
3   1.346106  18.453719     2.530273     0.388999  40.146424  37.134480
4  16.738944  11.409767     1.712791     1.107371  57.295856  11.735270
5  13.145142   8.087099     1.892620     0.655144   8.213133  68.006863
6  15.783514  11.770324     1.509318     2.260958  58.631399  10.044487
7   7.751419  15.476073     1.661228     1.318860  53.373414  20.419005
8   6.892503  16.368335     0.866781     2.174716  38.289210  35.408456
9  15.127043   9.202362     0.679473     2.129734   8.827245  64.034144

Computing the respective row sums reveals the expected result:

stats = pd.DataFrame(
    {
        "Total": recommendations.sum(axis=1),
        "Total_Bases": recommendations[g2].sum(axis=1),
        "Total_Phase_Agents": recommendations[g3].sum(axis=1),
    }
)
print(stats)

   Total  Total_Bases  Total_Phase_Agents
0  100.0    14.907817            4.613484
1  100.0    16.684165            3.477052
2  100.0    21.128321            3.199588
3  100.0    19.799825            2.919271
4  100.0    28.148711            2.820162
5  100.0    21.232241            2.547763
6  100.0    27.553838            3.770276
7  100.0    23.227493            2.980088
8  100.0    23.260838            3.041497
9  100.0    24.329405            2.809206

assert np.allclose(stats["Total"], 100)
assert (stats["Total_Bases"] >= 10).all()
assert (stats["Total_Phase_Agents"] <= 5).all()